interpret

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interpret[reaction-list] converts a list of reactions

{{arrow-form₁, rate-information₁}, {arrow-form₁, rate-information₂,...}}

into differential equations

{{ode₁, ode₂,...},{var₁,var₂...}}

The format of rate-information and arrow-form vary with the type of reaction being described. For more information see:

• Summary of basic arrow forms
• Generalized MWC reactions (in preparation)
• GRN functions
• Hill functions
• mass-action reactions
• Michaelis-Menten reactions
• NHCA reactions
• SSystems
• User-defined reactions

The variable Global`t is used for the time argument. A reaction has the format

{arrow-form, rateConstants}

For a list of all arrow forms see

• List of arrow forms

The output of interpret can be evaluate by NDSolve as in the following example:

	ic={A[0]==1,B[0]==1, C[0]==1,Bind[A, C][0] == 0};
	r = {k1 -> 1, k2 -> 2, k3 -> .5};
	n = NDSolve[Join[s[[1]], ic] /. r, s[[2]], {t, 0, 10}]