Selected Papers
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Shapiro BE, Levchenko A, Meyerowitz EM, Wold BJ, Mjolsness ED: Cellerator: extending a computer algebra systems to include biochemical arrows for signal transduction simulations. Bioinformatics 19(5):677-678 (2003)
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Shapiro BE, Hucka M, Finney A, Doyle J: MathSBML: a package for manipulating SBML-based biological models. Bioinformatics 20(16):2829-2831 (2004)
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Yang CR, Shapiro BE, Mjolsness ED, Hatfield GW: An enzyme mechanism language for the mathematical modeling of metabolic pathways. Bioinformaitcs 21(6): 774-780 (2005).
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Nadji TS, Yang CR, Shapiro BE, Hatfield GW, Mjolsness ED: Application of a generalized MWC model for the mathematical simulation of metabolic pathways regulated by allosteric enzymes. J. Bioinformatcs and Computational Biology 4(2):35-355 (2006).
Selected Posters
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(ISMB-2007/Vienna - 2.2 MB pdf) Mathematica Platforms for Modeling in Systems Biology: Recent Developments in MathSBML and Cellerator, Shapiro BE, Lu J, Hucka M, Mjolsness E.
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(ICSB-2006/Yokohama - 2.9 MB png) Systems Biollogy Software Support in Mathematica: Recent Developments in Cellerator, Shapiro BE, Vorobyov A, Murakami JG, Mjolsness ED.
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(ICSB-2004/Heidelberg - 2.4 MB pdf) MathSBML: A Mathematica Package for Systems Biology, Shapiro BE, Hucka M, Finney A.
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(PSB-2004/Hawaii - 1.9 MB pdf) MathSBML and Systems Biology Simulations, Shapiro BE, Hucka M, Finney A.
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(ICSB-2001/Pasadena - 2.4 MB pdf) Developmental Simulations with Cellerator, Shapiro BE, Mjolsness ED.
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(SIAM-2001/San Diego - 1.2 MB pdf) Automatic Equation Generation for Signal Transduction Modeling, Shapiro BE, Levchenko A, Mjolsness E.
